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STRINGSTRING
Phatr23079 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr23079" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr23079Predicted protein (259 aa)    
Predicted Functional Partners:
Phatr28979
Predicted protein; Belongs to the universal ribosomal protein uL11 family (164 aa)
   
 
  0.999
Phatr21073
Predicted protein (110 aa)
     
 
  0.999
Phatr51066
Predicted protein (152 aa)
     
 
  0.999
Phatr30262
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family (192 aa)
     
 
  0.999
Phatr25714
Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family (205 aa)
   
 
  0.999
Phatr31919
Predicted protein (305 aa)
 
 
  0.999
Phatr13361
Predicted protein; Belongs to the universal ribosomal protein uL3 family (389 aa)
   
 
  0.999
Phatr17324
40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family (261 aa)
   
 
  0.999
Phatr17414
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family (205 aa)
     
 
  0.999
Phatr28359
Predicted protein (229 aa)
   
 
  0.999
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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