STRINGSTRING
Phatr23168 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr23168" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr23168Predicted protein (252 aa)    
Predicted Functional Partners:
PCNA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (260 aa)
     
      0.842
Phatr13606
Predicted protein (338 aa)
       
      0.604
Phatr49112
Predicted protein (494 aa)
   
   
  0.600
FUM1
Precursor of fumarase fumarase (567 aa)
       
    0.582
Phatr29702
Predicted protein (878 aa)
         
  0.572
Phatr42437
Predicted protein (428 aa)
   
  0.509
Phatr38005
Predicted protein (1005 aa)
   
  0.509
Phatrdraft420
Predicted protein (290 aa)
   
 
  0.467
Phatr6848
Predicted protein (125 aa)
   
 
  0.467
Phatr50056
Predicted protein (233 aa)
   
 
  0.467
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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