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Phatr23292 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr23292" - L-galactono-1,4-lactone dehydrogenase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr23292L-galactono-1,4-lactone dehydrogenase (572 aa)    
Predicted Functional Partners:
Phatr47395
Predicted protein (331 aa)
         
  0.902
Phatr46616
L-ascorbate peroxidase (327 aa)
         
  0.902
Phatr13174
L-ascorbate peroxidase (277 aa)
         
  0.902
ACL
Atp-citrate synthase (1082 aa)
   
 
  0.613
Phatr37858
Predicted protein (398 aa)
       
  0.560
Phatr2738
Predicted protein (235 aa)
       
  0.560
Phatr12807
Predicted protein (326 aa)
       
  0.560
Phatr12269
Predicted protein (300 aa)
       
  0.560
Phatr50804
Glycolate oxidase (431 aa)
   
 
  0.541
GOX
Glycolate oxidase (381 aa)
   
 
  0.541
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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