STRINGSTRING
SKT1 protein (Phaeodactylum tricornutum) - STRING interaction network
"SKT1" - Succinyl-coenzyme A:3-oxo-acid coenzyme a-transferase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKT1Succinyl-coenzyme A-3-oxo-acid coenzyme a-transferase; Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate (511 aa)    
Predicted Functional Partners:
ACL
Atp-citrate synthase (1082 aa)
     
  0.995
Phatr23913
Acetyl-coa c-acetyltransferase (396 aa)
   
 
  0.987
HAD2
3-hydroxyacyl-coenzyme A dehydrogenase (329 aa)
   
 
  0.951
HCL1
Hydroxymethylglutaryl-coenzyme A lyase (321 aa)
       
  0.935
Phatr16649
Predicted protein (461 aa)
       
  0.903
Phatr45947
Predicted protein (403 aa)
   
 
  0.880
KCT1
Beta-ketoacyl-coa thiolase (386 aa)
   
 
  0.880
KCT3
Beta-ketoacyl-CoA thiolase (457 aa)
   
 
  0.880
Phatr43944
Predicted protein (493 aa)
   
      0.849
Phatr25572
Predicted protein (470 aa)
   
 
  0.828
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
Server load: low (10%) [HD]