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STRINGSTRING
Phatr23444 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr23444" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr23444Predicted protein (676 aa)    
Predicted Functional Partners:
Phatr9894
Predicted protein (140 aa)
   
 
  0.629
rpl2
Predicted protein (257 aa)
     
 
  0.598
Phatr25714
Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family (205 aa)
     
   
  0.571
Phatr9259
Predicted protein (92 aa)
   
 
  0.570
rpl20
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (98 aa)
   
 
  0.546
Phatr23691
Predicted protein; Belongs to the universal ribosomal protein uS8 family (130 aa)
     
 
  0.542
Phatr23324
Predicted protein; Belongs to the universal ribosomal protein uL5 family (176 aa)
     
 
  0.540
Phatr19025
Predicted protein (205 aa)
     
 
  0.540
Phatr17414
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family (205 aa)
     
   
  0.533
Phatr36226
60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family (183 aa)
     
   
  0.531
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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