STRINGSTRING
Phatr23557 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr23557" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr23557Predicted protein (395 aa)    
Predicted Functional Partners:
Phatrdraft391
Predicted protein (749 aa)
   
   
  0.467
Phatrdraft387
Predicted protein (749 aa)
   
   
  0.467
Phatr676
P1B, P type ATPase (710 aa)
   
   
  0.467
ATPase2-1B
P1B, P type ATPase (827 aa)
   
   
  0.467
ATPase5-1B
P1B, P type ATPase (754 aa)
   
   
  0.467
ATPase1-1B
P1B, P type ATPase (883 aa)
   
   
  0.467
Phatrdraft1621
Predicted protein (431 aa)
     
 
  0.432
Phatr48518
Predicted protein (373 aa)
     
 
  0.432
Phatr42755
Predicted protein (391 aa)
     
 
  0.432
Phatr42479
Predicted protein (391 aa)
     
 
  0.432
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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