STRINGSTRING
Phatr23687 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr23687" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr23687Predicted protein (106 aa)    
Predicted Functional Partners:
Phatr34146
60S ribosomal protein L6 (199 aa)
     
  0.998
Phatr36226
Predicted protein (183 aa)
     
  0.998
Phatr27125
Predicted protein (115 aa)
     
  0.998
Phatr50886
Predicted protein (145 aa)
     
  0.998
Phatr23324
Predicted protein (176 aa)
     
  0.998
rpl2
Predicted protein (257 aa)
     
  0.998
Phatr25375
Predicted protein (201 aa)
     
  0.998
Phatr48699
Predicted protein (217 aa)
     
  0.998
Phatr15619
60S ribosomal protein L13 (171 aa)
     
  0.998
Phatr18859
60S ribosomal protein L36 (108 aa)
     
  0.998
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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