STRINGSTRING
Phatr23798 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr23798" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr23798Predicted protein (710 aa)    
Predicted Functional Partners:
Phatr9929
Predicted protein (196 aa)
     
      0.665
BMS1
Ribosome biogenesis protein BMS1 (1096 aa)
     
        0.639
Phatr30960
Predicted protein (313 aa)
     
        0.627
Phatr8777
Predicted protein (110 aa)
     
        0.567
Phatr45441
Predicted protein; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (379 aa)
     
      0.513
Phatr47737
Predicted protein (361 aa)
     
      0.495
Phatr16814
Predicted protein (662 aa)
     
        0.495
Phatr45828
Predicted protein (805 aa)
     
        0.477
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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