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STRINGSTRING
Phatr23838 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr23838" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr23838Predicted protein (1879 aa)    
Predicted Functional Partners:
Phatr22868
Predicted protein (551 aa)
     
 
  0.918
Phatr45828
Predicted protein (805 aa)
     
 
  0.853
Phatr43504
Predicted protein (977 aa)
     
 
  0.793
Phatr43574
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (499 aa)
     
 
  0.781
Phatr15354
Predicted protein (300 aa)
     
   
  0.773
Phatr29217
Predicted protein (406 aa)
     
 
  0.735
BMS1
Ribosome biogenesis protein BMS1 (1096 aa)
     
 
  0.712
Phatr25666
Predicted protein (885 aa)
     
   
  0.704
Phatr12144
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes (220 aa)
     
 
  0.703
Phatr16814
Predicted protein (662 aa)
     
 
  0.696
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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