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STRINGSTRING
Phatr23908 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr23908" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr23908Predicted protein; Belongs to the mitochondrial carrier (TC 2.A.29) family (312 aa)    
Predicted Functional Partners:
GAPN
Glyceraldehyde-3-phosphate dehydrogenase (588 aa)
     
 
  0.533
Phatr50753
Predicted protein (202 aa)
           
  0.529
Phatr35810
Predicted protein (202 aa)
     
 
  0.485
Phatr26515
Predicted protein (272 aa)
     
   
  0.444
Phatr22027
Predicted protein; Belongs to the small Tim family (92 aa)
     
   
  0.425
Phatr8096
Predicted protein (67 aa)
           
  0.403
IscU
Iron-sulfur cluster assembly protein; Scaffold protein for the de novo synthesis of iron- sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins (160 aa)
           
  0.403
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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