STRINGSTRING
Phatr23920 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr23920" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr23920Predicted protein (503 aa)    
Predicted Functional Partners:
PHATR_3140
Predicted protein (196 aa)
       
  0.865
Phatr34538
Predicted protein (320 aa)
     
  0.848
PheRS
Phenylalanyl-trna synthetase class IIc family protein (405 aa)
   
   
  0.812
Phatr16944
Predicted protein (438 aa)
         
 
0.800
Phatr10025
Predicted protein (295 aa)
   
 
  0.785
Phatr42289
Lysyl-tRNA synthetase (537 aa)
     
 
  0.740
Phatr32202
Lysyl-tRNA synthetase (485 aa)
     
 
  0.740
Phatr19324
Predicted protein (554 aa)
   
   
  0.728
Phatr49748
Predicted protein (2821 aa)
     
 
  0.703
Phatr44942
Predicted protein (556 aa)
     
 
  0.703
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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