• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Phatr24775 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr24775" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr24775Predicted protein (711 aa)    
Predicted Functional Partners:
Phatr38848
Predicted protein (552 aa)
     
 
  0.854
Phatr24922
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (111 aa)
       
 
  0.829
RAD4
Xeroderma pigmentosum group (857 aa)
     
 
  0.816
Phatr15555
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1706 aa)
     
 
  0.815
ERCC2
Xeroderma pigmentosum group D complementing protein (782 aa)
     
 
  0.763
Phatr11441
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1212 aa)
     
 
  0.759
XPF
Excision repair cross-complementing rodent repair deficiency, complementation group 4 (975 aa)
     
 
  0.726
hRad23
RAD23 (434 aa)
       
 
  0.721
Phatr20574
Predicted protein (720 aa)
   
 
  0.717
Phatr47119
Nucleotide-binding protein (459 aa)
     
 
  0.713
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
Server load: low (9%) [HD]