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TOP6A protein (Phaeodactylum tricornutum) - STRING interaction network
"TOP6A" - Type II DNA topoisomerase VI subunit in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TOP6AType II DNA topoisomerase VI subunit (430 aa)    
Predicted Functional Partners:
TOP6B
Type II DNA topoisomerase 6 subunit (547 aa)
 
 
 
  0.953
RAD50
RAD50 recombination protein (1436 aa)
     
  0.852
Phatr44708
Predicted protein (790 aa)
       
 
  0.786
Phatr54612
Ercc4-like protein (736 aa)
     
 
  0.780
MRE11
Predicted protein (550 aa)
     
  0.717
Phatr52174
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1143 aa)
   
   
  0.679
Phatr13581
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1165 aa)
   
   
  0.679
Phatr44595
Mitotic cohesin (663 aa)
     
 
  0.619
XPF
Excision repair cross-complementing rodent repair deficiency, complementation group 4 (975 aa)
     
 
  0.608
Phatr51040
Predicted protein (607 aa)
         
  0.590
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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