STRINGSTRING
Sec13 protein (Phaeodactylum tricornutum) - STRING interaction network
"Sec13" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sec13Predicted protein (330 aa)    
Predicted Functional Partners:
Phatr45854
Predicted protein (1689 aa)
       
  0.997
Phatr47010
Predicted protein (1133 aa)
     
  0.996
Sec23
Predicted protein (759 aa)
     
  0.995
Phatr4700
Predicted protein (325 aa)
     
0.983
Phatr13396
Predicted protein (680 aa)
     
  0.979
Sar1a
Predicted protein (192 aa)
     
  0.926
Phatr38474
Predicted protein (184 aa)
       
  0.924
Phatr47270
Predicted protein (897 aa)
     
  0.867
Phatr48220
Predicted protein (1041 aa)
     
  0.850
Phatr49065
Predicted protein (2083 aa)
       
  0.847
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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