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Phatr25133 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr25133" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr25133Predicted protein (562 aa)    
Predicted Functional Partners:
Phatr43105
Predicted protein (455 aa)
     
 
  0.998
Phatr30365
Predicted protein; Involved in the biogenesis of the 60S ribosomal subunit (677 aa)
     
 
  0.998
Phatr12394
Predicted protein (260 aa)
     
 
  0.992
Phatr14145
Predicted protein (516 aa)
     
 
  0.990
Phatr2182
Predicted protein (360 aa)
   
0.989
Phatr11894
Predicted protein (209 aa)
     
 
  0.983
Phatr47058
Predicted protein (606 aa)
     
      0.977
Phatr13820
Predicted protein (282 aa)
     
   
  0.971
Phatr43713
Predicted protein (609 aa)
     
 
  0.960
Phatr11703
Predicted protein (820 aa)
     
        0.958
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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