STRINGSTRING
Phatr25298 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr25298" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr25298Predicted protein (505 aa)    
Predicted Functional Partners:
Phatr28737
Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis (439 aa)
       
 
  0.815
EF-1
Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis (439 aa)
       
 
  0.815
Phatr34493
Predicted protein (447 aa)
     
 
  0.642
Phatr15121
Predicted protein (450 aa)
       
 
  0.626
Phatr23164
Predicted protein (489 aa)
     
 
  0.553
Phatr43033
Predicted protein (641 aa)
       
      0.547
Phatr12113
Predicted protein (284 aa)
       
      0.452
Phatr8045
Predicted protein (114 aa)
     
      0.433
Phatr8044
Predicted protein (114 aa)
     
      0.433
Phatr51271
Predicted protein (112 aa)
     
      0.433
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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