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Phatr25360 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr25360" - Short-chain dehydrogenase/reductase acting with NAD or NADP as acceptor in Phaeodactylum tricornutum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr25360Short-chain dehydrogenase/reductase acting with NAD or NADP as acceptor (327 aa)    
Predicted Functional Partners:
Phatr9255
Predicted protein (278 aa)
       
  0.923
FABG
3-oxoacyl-[acyl-carrier protein (253 aa)
 
0.853
Phatr25739
Predicted protein (285 aa)
 
 
 
  0.578
Phatr35939
Predicted protein (269 aa)
 
 
 
  0.546
Phatr25521
Predicted protein (258 aa)
 
 
 
  0.546
Phatr47583
Predicted protein (296 aa)
   
          0.481
Phatr22411
Predicted protein (321 aa)
   
          0.445
ACC2
Biotin carboxylase (2282 aa)
     
   
  0.421
DER1
Peroxisomal 2,4-dienoyl-CoA reductase (296 aa)
 
 
 
  0.411
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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