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Phatr25379 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr25379" - Pyrroline-5-carboxylate reductase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr25379Pyrroline-5-carboxylate reductase (289 aa)    
Predicted Functional Partners:
PHATR_1155
Predicted protein (509 aa)
     
  0.921
Phatr35643
Predicted protein (337 aa)
       
  0.910
Phatr31906
Aldehyde dehydrogenase (551 aa)
       
  0.909
Phatr55162
Predicted protein (437 aa)
         
    0.900
Phatr5156
Predicted protein (188 aa)
         
    0.900
Phatr4950
Predicted protein (193 aa)
         
    0.900
Phatr48891
Putative uncharacterized protein (427 aa)
         
    0.900
Phatr38694
Predicted protein (348 aa)
         
    0.900
Phatr13557
Proly 4-hydroxylase (226 aa)
         
    0.900
Phatr10655
Predicted protein (230 aa)
         
    0.900
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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