STRINGSTRING
SMC1 protein (Phaeodactylum tricornutum) - STRING interaction network
"SMC1" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC1Predicted protein (1237 aa)    
Predicted Functional Partners:
SMC3
Predicted protein (1232 aa)
     
0.995
Phatr54417
Cohesin (1455 aa)
     
  0.988
Phatr44595
Mitotic cohesin (663 aa)
     
  0.987
Phatr44165
Predicted protein (1356 aa)
     
 
0.976
Phatr10628
Predicted protein (575 aa)
     
  0.971
Phatr52174
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1143 aa)
     
 
  0.934
Phatr13581
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1165 aa)
     
 
  0.934
Phatr50138
Predicted protein (1699 aa)
     
  0.930
Phatr48451
Separase protein (2039 aa)
     
  0.903
SMC
Predicted protein (1271 aa)
     
  0.888
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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