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  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
SMC1 protein (Phaeodactylum tricornutum) - STRING interaction network
"SMC1" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC1Predicted protein (1237 aa)    
Predicted Functional Partners:
Phatr44595
Mitotic cohesin (663 aa)
     
 
  0.997
SMC3
Predicted protein (1232 aa)
   
 
0.994
Phatr54417
Cohesin (1455 aa)
     
 
  0.993
Phatrdraft1590
Predicted protein (958 aa)
     
 
  0.985
Phatr48451
Separase protein (2039 aa)
     
 
  0.979
Phatr43664
Predicted protein (655 aa)
     
 
  0.974
Phatr50138
Sister chromatid cohesion protein (1699 aa)
     
 
  0.969
SMC5
Predicted protein (1099 aa)
     
   
  0.962
Phatr36284
Predicted protein (924 aa)
     
 
  0.933
Phatr43362
Predicted protein (398 aa)
     
 
  0.931
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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