STRINGSTRING
Phatr25974 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr25974" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr25974Predicted protein (733 aa)    
Predicted Functional Partners:
Phatr10539
Predicted protein (328 aa)
       
0.902
Phatr8996
Predicted protein (343 aa)
       
0.742
Phatr4129
Predicted protein (280 aa)
       
0.742
Phatr21660
Predicted protein (2400 aa)
       
  0.656
Phatr30282
Predicted protein (341 aa)
       
  0.621
Phatr15031
Predicted protein (118 aa)
       
  0.621
Phatr29223
Predicted protein (439 aa)
     
0.544
Phatr50961
Predicted protein (357 aa)
       
 
  0.537
Phatr46264
Predicted protein (386 aa)
       
 
  0.537
Phatr15081
Predicted protein (368 aa)
       
 
  0.537
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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