STRINGSTRING
Phatr26057 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr26057" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr26057Predicted protein (386 aa)    
Predicted Functional Partners:
Phatr15848
Predicted protein (206 aa)
  0.998
PheRS
Phenylalanyl-trna synthetase class IIc family protein (405 aa)
   
   
  0.727
Phatr52174
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1143 aa)
   
   
  0.669
Phatr13581
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1165 aa)
   
   
  0.669
Phatr26176
Predicted protein (408 aa)
     
      0.660
Phatr11434
Predicted protein (357 aa)
   
 
  0.645
Phatr11288
Predicted protein (357 aa)
   
 
  0.645
Phatr30572
Predicted protein (462 aa)
   
 
  0.628
Phatr15374
Predicted protein (442 aa)
   
 
  0.628
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase (614 aa)
   
   
  0.610
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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