STRINGSTRING
Phatr26290 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr26290" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr26290Predicted protein (989 aa)    
Predicted Functional Partners:
ACL
Atp-citrate synthase (1082 aa)
   
 
  0.823
Phatr30145
Citrate synthase (471 aa)
   
 
  0.631
Phatr47407
Predicted protein (652 aa)
         
  0.593
Phatr24772
Predicted protein (801 aa)
         
0.567
FUM1
Precursor of fumarase fumarase (567 aa)
   
   
  0.559
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
           
  0.452
Phatr24739
Predicted protein (1594 aa)
           
  0.452
Phatr14762
Isocitrate dehydrogenase (357 aa)
   
 
  0.442
Phatr51720
Fumarate reductase flavoprotein (668 aa)
   
 
  0.413
SDH1
Succinate dehydrogenase flavoprotein; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q) (638 aa)
   
 
  0.413
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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