STRINGSTRING
UBI3 protein (Phaeodactylum tricornutum) - STRING interaction network
"UBI3" - Ubiquitin extension protein 3 in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBI3Ubiquitin extension protein 3 (155 aa)    
Predicted Functional Partners:
Phatr21073
Predicted protein (110 aa)
     
  0.998
Phatr30160
Predicted protein (104 aa)
     
  0.998
Phatr18559
40S ribosomal protein S6 (245 aa)
     
  0.998
Phatr48411
Predicted protein (264 aa)
     
  0.998
Phatr8686
40S ribosomal protein S12 (116 aa)
     
  0.998
Phatr19314
Predicted protein (125 aa)
     
    0.998
Phatr51066
Predicted protein (152 aa)
     
  0.998
Phatr31073
Predicted protein (188 aa)
     
  0.998
Phatr17519
Predicted protein (143 aa)
     
  0.998
rps19
Predicted protein (147 aa)
     
  0.998
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
Server load: low (6%) [HD]