STRINGSTRING
Phatr27246 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr27246" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr27246Predicted protein (283 aa)    
Predicted Functional Partners:
RPA1
Replication protein a large 70 kD subunit (606 aa)
     
  0.977
Phatr49527
Predicted protein (1089 aa)
     
 
  0.963
Phatr49526
Predicted protein (1633 aa)
     
 
  0.963
FEN1
Flap endonuclease 1; Structure-specific nuclease with 5’-flap endonuclease and 5’-3’ exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5’-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5’-end of a downstream Okazaki fragment. It enters the flap from the 5’-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts as a [...] (421 aa)
   
  0.868
Phatr46971
Predicted protein (696 aa)
   
  0.868
Phatr48206
Predicted protein (794 aa)
   
  0.847
Phatr46734
Predicted protein (894 aa)
   
  0.847
Phatr54677
DNA polymerase (1087 aa)
     
  0.837
RPA2
Predicted protein (270 aa)
     
  0.837
Rad22
Predicted protein (468 aa)
     
  0.781
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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