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STRINGSTRING
Phatr27263 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr27263" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr27263Predicted protein (196 aa)    
Predicted Functional Partners:
SAS1
Regulator of chromatin silencing (624 aa)
     
 
  0.994
Phatr21538
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA (256 aa)
     
 
  0.994
Phatr15481
Predicted protein (482 aa)
     
 
  0.992
Phatr45441
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (379 aa)
     
 
  0.990
Phatr13534
Predicted protein (120 aa)
     
 
  0.979
BMS1
Ribosome biogenesis protein BMS1 (1096 aa)
     
 
  0.970
Phatr19552
Predicted protein (529 aa)
     
 
  0.969
Phatr46837
Predicted protein (997 aa)
     
 
  0.966
Phatr9983
Predicted protein (123 aa)
   
 
  0.963
Phatr15757
Predicted protein (181 aa)
     
 
  0.962
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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