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Phatr27323 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr27323" - Tyrosine--tRNA ligase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr27323Tyrosine--tRNA ligase (488 aa)    
Predicted Functional Partners:
Phatr51120
Predicted protein; Belongs to the class-I aminoacyl-tRNA synthetase family (777 aa)
   
   
  0.937
Phatr15595
Predicted protein; Belongs to the class-I aminoacyl-tRNA synthetase family (360 aa)
   
   
  0.934
Phatr38963
D-tyrosyl-tRNA(Tyr) deacylase (167 aa)
   
   
  0.927
GluRS_2
Glutamyl-trna synthase; Belongs to the class-I aminoacyl-tRNA synthetase family (588 aa)
   
   
  0.926
Phatr40901
Predicted protein; Belongs to the class-I aminoacyl-tRNA synthetase family (405 aa)
   
   
  0.925
Phatr17198
Predicted protein; Belongs to the class-I aminoacyl-tRNA synthetase family (1052 aa)
   
 
  0.920
GluRS_1
Glutamate-trna ligase; Belongs to the class-I aminoacyl-tRNA synthetase family (523 aa)
   
   
  0.911
Phatr11088
Predicted protein; Belongs to the class-I aminoacyl-tRNA synthetase family (1086 aa)
   
   
  0.910
Phatr29824
Predicted protein; Belongs to the class-I aminoacyl-tRNA synthetase family (1177 aa)
   
 
  0.905
PHATR_3578
Pseudouridine synthase (293 aa)
     
 
  0.900
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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