STRINGSTRING
Phatr2738 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr2738" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr2738Predicted protein (235 aa)    
Predicted Functional Partners:
Phatr33530
Predicted protein (392 aa)
       
  0.948
Phatr31683
Predicted protein (426 aa)
 
 
  0.946
Phatr37858
Predicted protein (398 aa)
   
   
0.914
Phatr49325
Predicted protein (343 aa)
   
 
  0.687
Phatr47271
Predicted protein (330 aa)
   
 
  0.687
Phatr19000
Farnesyltranstransferase (337 aa)
   
 
  0.687
Phatr16615
Predicted protein (325 aa)
   
 
  0.687
Phatr15180
Predicted protein (309 aa)
   
 
  0.687
Phatrdraft1025
Tocopherol cyclase (515 aa)
 
   
  0.665
Phatr47067
Predicted protein (1237 aa)
         
  0.631
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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