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Phatr27709 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr27709" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr27709Predicted protein (640 aa)    
Predicted Functional Partners:
Phatr25331
Predicted protein (505 aa)
   
  0.999
PheRS
Phenylalanyl-trna synthetase class IIc family protein (405 aa)
   
  0.994
Phatr8926
Predicted protein (349 aa)
   
  0.972
Phatr29824
Predicted protein (1177 aa)
   
 
  0.922
Phatr40901
Predicted protein (405 aa)
   
   
  0.765
Phatr17198
Predicted protein (1052 aa)
   
 
  0.761
Phatr42289
Lysyl-tRNA synthetase (537 aa)
   
 
  0.757
Phatr32202
Lysyl-tRNA synthetase (485 aa)
   
 
  0.757
Phatr47999
Predicted protein (955 aa)
   
 
  0.755
Phatr15186
Predicted protein (959 aa)
   
 
  0.755
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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