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STRINGSTRING
OAT protein (Phaeodactylum tricornutum) - STRING interaction network
"OAT" - Ornithine aminotransferase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OATOrnithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family (448 aa)    
Predicted Functional Partners:
P5CS
Delta-1-pyrroline-5-carboxylate synthase; Delta l-pyrroline-5-carboxylate synthetase; In the C-terminal section; belongs to the gamma- glutamyl phosphate reductase family (747 aa)
   
  0.995
Phatr18027
Predicted protein (706 aa)
   
  0.995
Phatr38509
Arginase; Belongs to the arginase family (301 aa)
 
  0.994
ODC2
Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family (390 aa)
   
 
  0.970
Phatr31906
Aldehyde dehydrogenase (551 aa)
   
  0.940
Phatr35643
Predicted protein (337 aa)
         
  0.911
Phatr21116
Predicted protein; Argininosuccinate synthase (418 aa)
   
   
  0.904
Phatr30514
Predicted protein; Belongs to the ATCase/OTCase family (351 aa)
 
   
  0.896
Phatr40880
Agmatinase; Belongs to the arginase family (416 aa)
   
 
  0.876
Phatr34526
Predicted protein (440 aa)
   
   
  0.811
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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