STRINGSTRING
OAT protein (Phaeodactylum tricornutum) - STRING interaction network
"OAT" - Ornithine aminotransferase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OATOrnithine aminotransferase (448 aa)    
Predicted Functional Partners:
Phatr38509
Predicted protein (301 aa)
 
  0.992
P5CS
Delta l-pyrroline-5-carboxylate synthetase (747 aa)
   
  0.983
Phatr18027
Predicted protein (706 aa)
   
  0.983
Phatr31906
Aldehyde dehydrogenase (551 aa)
   
  0.960
ODC2
Ornithine decarboxylase (390 aa)
       
  0.943
Phatr10902
Predicted protein (473 aa)
   
 
  0.932
Phatr35643
Predicted protein (337 aa)
       
  0.909
Phatr22113
Bifunctional aspartokinase (870 aa)
   
 
  0.863
Phatr3969
Predicted protein (256 aa)
 
 
  0.852
Phatr30514
Predicted protein (351 aa)
 
 
  0.849
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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