STRINGSTRING
Phatr27762 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr27762" - Ubiquitin carrier protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr27762Ubiquitin carrier protein (160 aa)    
Predicted Functional Partners:
SUMO
Small ubiquitin-like modifier (103 aa)
     
  0.995
Phatr12578
Predicted protein (68 aa)
     
  0.995
SAE2
Sumo-activating enzyme 2 (643 aa)
     
  0.990
Phatr54869
Predicted protein (445 aa)
     
  0.982
PCNA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (260 aa)
     
  0.974
Phatr42712
Predicted protein (219 aa)
     
  0.901
Rad22
Predicted protein (468 aa)
       
  0.887
Phatr23164
Predicted protein (489 aa)
     
  0.882
Phatr20308
Predicted protein (148 aa)
     
  0.843
Phatr47992
Predicted protein (432 aa)
       
  0.831
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
Server load: low (6%) [HD]