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SUMO protein (Phaeodactylum tricornutum) - STRING interaction network
"SUMO" - Small ubiquitin-like modifier in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUMOSmall ubiquitin-like modifier (103 aa)    
Predicted Functional Partners:
Phatr27762
Ubiquitin carrier protein (160 aa)
     
  0.995
Phatr49765
Predicted protein (1283 aa)
       
  0.951
Phatr44818
Predicted protein (762 aa)
       
  0.951
PCNA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (260 aa)
     
  0.933
Phatr42712
Predicted protein (219 aa)
     
  0.905
SAE2
Sumo-activating enzyme 2 (643 aa)
     
  0.863
PAS2
Ubiquitin carrier protein (168 aa)
       
  0.833
Phatr36198
Ubiquitin carrier protein (163 aa)
       
  0.833
Phatr30092
Predicted protein (147 aa)
       
  0.833
UBC2
Ubiquitin carrier protein (147 aa)
       
  0.833
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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