STRINGSTRING
Phatr27905 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr27905" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr27905Predicted protein (418 aa)    
Predicted Functional Partners:
Phatr14145
Predicted protein (516 aa)
     
 
  0.972
Phatr8777
Predicted protein (110 aa)
     
 
  0.968
Phatr44555
Predicted protein (743 aa)
     
        0.958
Phatr11894
Predicted protein (209 aa)
     
        0.958
Phatr13384
Predicted protein (594 aa)
     
      0.944
Phatr12679
Predicted protein (290 aa)
     
 
  0.930
Phatr45356
Predicted protein (479 aa)
     
 
  0.927
Phatr43822
Predicted protein (341 aa)
     
 
  0.907
Phatr36927
Predicted protein (409 aa)
     
 
  0.878
Phatr45727
Predicted protein (948 aa)
     
 
  0.866
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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