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PEPCase_1 protein (Phaeodactylum tricornutum) - STRING interaction network
"PEPCase_1" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PEPCase_1Predicted protein (1009 aa)    
Predicted Functional Partners:
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
     
   
  0.898
Phatr24739
Predicted protein (1594 aa)
     
   
  0.898
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase (614 aa)
         
  0.721
ACL
Atp-citrate synthase (1082 aa)
   
 
  0.706
Phatr31718
Inosine-5’-monophosphate dehydrogenase (468 aa)
         
  0.702
PPdK
Predicted protein (1011 aa)
         
  0.652
Phatr30145
Citrate synthase (471 aa)
     
 
  0.642
ME1
Malic enzyme (560 aa)
         
  0.583
Phatr51970
Malic enzyme (555 aa)
         
  0.583
ACC1
Acetyl-coa carboxylase (2092 aa)
   
   
  0.581
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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