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STRINGSTRING
Phatr28181 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr28181" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr28181Predicted protein (365 aa)    
Predicted Functional Partners:
Phatr47067
Predicted protein (1237 aa)
   
   
  0.926
Phatr1690
Predicted protein (495 aa)
   
 
  0.874
P5CS
Delta-1-pyrroline-5-carboxylate synthase; Delta l-pyrroline-5-carboxylate synthetase; In the C-terminal section; belongs to the gamma- glutamyl phosphate reductase family (747 aa)
   
 
  0.745
Phatr18027
Predicted protein (706 aa)
   
 
  0.745
GDCP
Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine (1005 aa)
   
   
  0.694
Phatr23429
Predicted protein (615 aa)
   
 
  0.643
Phatr18087
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily (499 aa)
   
   
  0.620
Phatr8717
Serine hydroxymethyltransferase; Interconversion of serine and glycine; Belongs to the SHMT family (464 aa)
   
   
  0.580
SHMT2
Serine hydroxymethyltransferase; Interconversion of serine and glycine; Belongs to the SHMT family (501 aa)
   
   
  0.580
SHMT
Serine hydroxymethyltransferase; Interconversion of serine and glycine; Belongs to the SHMT family (473 aa)
   
   
  0.580
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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