STRINGSTRING
Phatr28219 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr28219" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr28219Predicted protein (447 aa)    
Predicted Functional Partners:
Phatr9090
Predicted protein (431 aa)
   
0.999
Phatr45122
Predicted protein (421 aa)
   
0.999
Phatr11735
Predicted protein (389 aa)
   
0.999
Phatr30067
Predicted protein (403 aa)
   
0.999
RPN7
Regulatory proteasome non-atpase subunit 7 (330 aa)
     
  0.999
Phatr33159
Predicted protein (131 aa)
 
 
  0.998
Phatr41778
Predicted protein (284 aa)
   
0.998
RPN5
Regulatory proteasome non-atpase subunit 5 (457 aa)
     
  0.997
RPN3
Regulatory proteasome non-atpase subunit 3 (323 aa)
     
  0.997
Phatr24474
Proteasome subunit alpha type; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH (264 aa)
     
  0.997
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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