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STRINGSTRING
H2A-m1 protein (Phaeodactylum tricornutum) - STRING interaction network
"H2A-m1" - Histone H2A in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2A-m1Histone H2A (138 aa)    
Predicted Functional Partners:
H4-1a
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (103 aa)
 
 
 
  0.965
H4-1b
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (103 aa)
 
 
 
  0.965
Phatr52450
Predicted protein (154 aa)
     
 
  0.949
Phatr18239
Predicted protein (1058 aa)
     
 
  0.939
myst
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family (349 aa)
     
 
  0.938
H2B-1b
Histone H2B (116 aa)
 
 
 
  0.936
H2B-1a
Histone H2B (116 aa)
 
 
 
  0.936
Phatr19568
RuvB-like helicase; Belongs to the RuvB family (485 aa)
     
 
  0.935
Phatr16875
Predicted protein (164 aa)
       
 
  0.928
Phatr51040
Predicted protein (607 aa)
       
 
  0.918
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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