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DEI1 protein (Phaeodactylum tricornutum) - STRING interaction network
"DEI1" - Delta-3,5-delta-2,4-dienoyl-CoA isomerase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DEI1Delta-3,5-delta-2,4-dienoyl-CoA isomerase (291 aa)    
Predicted Functional Partners:
Phatr5527
Predicted protein (170 aa)
   
  0.832
HAD2
3-hydroxyacyl-coenzyme A dehydrogenase (329 aa)
 
 
  0.792
KCT1
Beta-ketoacyl-coa thiolase (386 aa)
     
  0.749
FAO1
Peroxisomal bifunctional enzyme (767 aa)
 
0.745
Phatr35240
Predicted protein (684 aa)
 
 
0.733
Phatr18064
Predicted protein (298 aa)
   
  0.725
Phatr45947
Predicted protein (403 aa)
     
  0.704
Phatr32173
Predicted protein (575 aa)
     
 
  0.692
Phatr44982
Predicted protein (203 aa)
     
 
  0.668
KCT3
Beta-ketoacyl-CoA thiolase (457 aa)
     
  0.659
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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