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Phatr28577 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr28577" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr28577Predicted protein (377 aa)    
Predicted Functional Partners:
Phatrdraft590
Predicted protein (334 aa)
     
  0.977
Phatrdraft465
Predicted protein (334 aa)
     
  0.977
Phatr43871
Predicted protein (673 aa)
       
  0.833
Phatr45841
Predicted protein (331 aa)
     
  0.828
RabGDI
Predicted protein (446 aa)
       
  0.758
Rab18
Predicted protein (213 aa)
       
 
  0.618
Rab1b
Predicted protein (208 aa)
       
 
  0.618
Rab1a
Predicted protein (203 aa)
       
 
  0.618
ARL1
Predicted protein (184 aa)
     
 
  0.555
Rab2
Predicted protein (210 aa)
     
 
  0.537
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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