STRINGSTRING
Phatr28689 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr28689" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr28689Predicted protein (453 aa)    
Predicted Functional Partners:
Phatr25666
Predicted protein (885 aa)
     
      0.959
Phatr30585
Predicted protein (942 aa)
     
   
  0.890
Phatr43574
Predicted protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (499 aa)
     
   
  0.890
Phatr7810
Predicted protein (98 aa)
     
 
  0.882
Phatr32758
Predicted protein (483 aa)
   
   
0.874
Phatr25549
Predicted protein (512 aa)
   
 
0.865
Phatr18258
Predicted protein (743 aa)
     
        0.836
Phatr15481
Predicted protein (482 aa)
     
   
  0.831
Phatr19552
Predicted protein (529 aa)
     
 
  0.826
Phatr14032
Predicted protein (467 aa)
   
 
0.823
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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