STRINGSTRING
Phatr28723 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr28723" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr28723Predicted protein (175 aa)    
Predicted Functional Partners:
Phatr47883
Predicted protein (1054 aa)
       
 
  0.979
Phatr41003
Predicted protein (251 aa)
       
      0.944
Phatr21420
Predicted protein (743 aa)
       
 
  0.848
Phatr10902
Predicted protein (473 aa)
   
 
  0.652
Phatr12309
Predicted protein (134 aa)
     
      0.636
CacyBP
Calcyclin-binding protein (272 aa)
     
      0.573
Phatr50577
Acetylornithine aminotransferase (476 aa)
   
 
  0.541
OAT
Ornithine aminotransferase (448 aa)
   
 
  0.541
Phatr19762
Predicted protein (807 aa)
   
 
  0.541
Phatrdraft1638
Predicted protein (548 aa)
     
      0.536
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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