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STRINGSTRING
Phatr28730 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr28730" - Peptidyl-prolyl cis-trans isomerase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr28730Peptidyl-prolyl cis-trans isomerase (115 aa)    
Predicted Functional Partners:
Phatr42478
Predicted protein (809 aa)
       
 
  0.761
Phatr13834
Predicted protein (172 aa)
     
 
  0.751
Phatr23164
Peptidylprolyl isomerase (489 aa)
     
 
  0.726
Phatr44426
Predicted protein (638 aa)
     
 
  0.710
Phatr47180
Predicted protein (610 aa)
     
 
  0.658
Phatr43288
Prephenate dehydrogenase (395 aa)
     
   
  0.637
RNAP-II_3
Predicted protein (181 aa)
     
 
  0.610
Phatr3621
Serine/threonine-protein phosphatase 2A activator; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (259 aa)
     
   
  0.602
Phatr47388
Transcription elongation factor SPT5 (1057 aa)
     
 
  0.569
Phatr15555
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1706 aa)
     
 
  0.548
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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