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Phatr28730 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr28730" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr28730Predicted protein (115 aa)    
Predicted Functional Partners:
Phatr23164
Predicted protein (489 aa)
     
 
  0.818
Phatr8045
Predicted protein (114 aa)
     
 
  0.702
Phatr8044
Predicted protein (114 aa)
     
 
  0.702
Phatr51271
Predicted protein (112 aa)
     
 
  0.702
Phatr30615
Predicted protein (116 aa)
     
 
  0.702
Phatr23489
Predicted protein (125 aa)
     
 
  0.702
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase (614 aa)
   
   
  0.694
Phatr31718
Inosine-5’-monophosphate dehydrogenase (468 aa)
     
 
  0.660
Phatr15555
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1706 aa)
       
 
  0.654
Phatr9011
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (194 aa)
     
 
  0.642
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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