STRINGSTRING
Phatr28833 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr28833" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr28833Predicted protein (464 aa)    
Predicted Functional Partners:
Phatr9832
Predicted protein (187 aa)
       
  0.947
Phatr45841
Predicted protein (331 aa)
     
 
  0.940
Phatr16932
Predicted protein (361 aa)
         
  0.940
Phatr7108
Predicted protein (138 aa)
       
  0.894
Phatr8670
Predicted protein (726 aa)
       
 
  0.647
Phatr48190
Predicted protein (780 aa)
       
 
  0.647
Phatr23164
Predicted protein (489 aa)
     
 
  0.616
Phatr48315
Predicted protein (831 aa)
     
      0.491
Phatr9283
Predicted protein (623 aa)
       
      0.489
Phatr45758
Nadph-cytochrome P450 reductase (753 aa)
       
      0.489
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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