STRINGSTRING
Phatr28841 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr28841" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr28841Predicted protein (204 aa)    
Predicted Functional Partners:
Phatr19324
Predicted protein (554 aa)
         
  0.654
Phatr47152
Predicted protein (437 aa)
   
 
  0.560
Phatr23281
Predicted protein (319 aa)
   
 
  0.560
Phatr45701
Predicted protein (444 aa)
   
 
  0.557
Phatr12989
Predicted protein (363 aa)
   
 
  0.557
Phatr54621
Glycosyl transferase, family 1 (433 aa)
   
   
  0.542
Phatr54068
N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein (450 aa)
   
   
  0.542
SQD2
Glycosyl transferase, group 1 (507 aa)
   
   
  0.542
Phatr42467
Predicted protein (679 aa)
   
   
  0.542
Phatr22554
Mannosyltransferase (419 aa)
   
   
  0.542
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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