STRINGSTRING
Phatr28874 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr28874" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr28874Predicted protein (410 aa)    
Predicted Functional Partners:
Phatr19669
Predicted protein (202 aa)
     
  0.977
Phatr44534
Predicted protein (417 aa)
       
  0.850
Phatr49632
Predicted protein (420 aa)
         
 
0.800
Phatr32097
Predicted protein (368 aa)
       
  0.788
Phatr30898
Vacuolar protein (429 aa)
       
  0.788
Phatr38130
Predicted protein (199 aa)
       
  0.723
sUbi
Ubiquitin-like protein (268 aa)
       
  0.707
hUbi
Predicted proteinUbiquitin extension protein 4 (381 aa)
       
  0.707
Phatr49037
Predicted protein (205 aa)
       
  0.707
Phatr48529
Predicted protein (386 aa)
       
  0.671
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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