STRINGSTRING
Phatr29309 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr29309" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr29309Predicted protein (842 aa)    
Predicted Functional Partners:
Phatr44775
Predicted protein (580 aa)
         
  0.933
Phatr19513
Predicted protein (717 aa)
         
  0.933
Phatr27240
Predicted protein (746 aa)
         
    0.928
gshB
Glutathione synthase. glutathione synthetase. GSH synthetase (567 aa)
     
 
  0.905
Phatr1884
Predicted protein (435 aa)
     
 
  0.882
Phatr8717
Serine hydroxymethyltransferase; Interconversion of serine and glycine (464 aa)
       
  0.821
SHMT2
Serine hydroxymethyltransferase; Interconversion of serine and glycine (501 aa)
       
  0.821
SHMT
Serine hydroxymethyltransferase; Interconversion of serine and glycine (473 aa)
       
  0.821
Phatr15917
Cystathionine gamma-lyase (392 aa)
   
 
  0.813
AAT_2
Aspartate aminotransferase (426 aa)
   
    0.808
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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