STRINGSTRING
DDB1 protein (Phaeodactylum tricornutum) - STRING interaction network
"DDB1" - Damage-specific DNA binding protein 1 in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDB1Damage-specific DNA binding protein 1 (1284 aa)    
Predicted Functional Partners:
CUL1_2
CULlin protein 4 (821 aa)
     
  0.986
Phatr47119
Nucleotide-binding protein (459 aa)
       
  0.974
Rbx1
Predicted protein (134 aa)
       
  0.928
Phatr36569
Predicted protein (166 aa)
     
  0.878
CUL1_3
CULlin protein 1 (741 aa)
     
  0.878
CUL1_1
CULlin protein 3 (762 aa)
     
  0.878
Phatr43884
Predicted protein (550 aa)
       
 
  0.848
APC11
Predicted protein (82 aa)
       
  0.755
Phatr7026
Predicted protein (102 aa)
     
      0.681
Phatr51110
Predicted protein (428 aa)
     
      0.681
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
Server load: low (8%) [HD]