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STRINGSTRING
CsdB protein (Phaeodactylum tricornutum) - STRING interaction network
"CsdB" - Selenocysteine lyase in Phaeodactylum tricornutum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CsdBSelenocysteine lyase (386 aa)    
Predicted Functional Partners:
Phatr34373
Adenylyltransferase and sulfurtransferase MOCS3 homolog; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Acts by mediating the C-terminal thiocarboxylation of the sulfur carrier URM1. Its N-terminus first activates URM1 as acyl-adenylate (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 to form thiocarboxylation (-COSH) of its C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards U [...] (418 aa)
   
  0.872
Phatr46040
Predicted protein (359 aa)
   
  0.860
Phatr46031
Predicted protein (359 aa)
   
  0.860
Phatr17215
Predicted protein (297 aa)
   
  0.860
IscU
Iron-sulfur cluster assembly protein; Scaffold protein for the de novo synthesis of iron- sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins (160 aa)
 
 
  0.841
IscS
Precursor of desulfurase cysteine desulfurase IscS (400 aa)
    
   
 
0.815
Phatr14927
Predicted protein (87 aa)
      
 
  0.710
Phatr45826
Predicted protein (238 aa)
   
 
  0.610
Phatr44482
Predicted protein (600 aa)
      
   
  0.583
Phatrdraft278
Predicted protein (77 aa)
   
 
  0.480
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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