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CsdB protein (Phaeodactylum tricornutum) - STRING interaction network
"CsdB" - Selenocysteine lyase in Phaeodactylum tricornutum
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CsdBSelenocysteine lyase (386 aa)    
Predicted Functional Partners:
IscU
Iron-sulphur assembly protein isc; Scaffold protein for the de novo synthesis of iron- sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins (160 aa)
 
  0.987
Phatr14927
Predicted protein (87 aa)
       
  0.972
Phatr34373
Predicted protein; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Acts by mediating the C-terminal thiocarboxylation of the sulfur carrier URM1. Its N-terminus first activates URM1 as acyl-adenylate (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 to form thiocarboxylation (-COSH) of its C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards URM1. Subsequently, a transient disulfi [...] (418 aa)
   
  0.923
Phatr46040
Predicted protein (359 aa)
   
  0.883
Phatr46031
Predicted protein (359 aa)
   
  0.883
Phatr17215
Predicted protein (297 aa)
   
  0.883
Phatrdraft1610
Predicted protein (279 aa)
   
  0.824
Phatrdraft1259
Predicted protein (279 aa)
   
  0.824
Phatr7342
Predicted protein (106 aa)
   
  0.824
Phatr14478
Predicted protein (112 aa)
   
  0.824
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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