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Phatr29660 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr29660" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr29660Predicted protein (260 aa)    
Predicted Functional Partners:
Phatr48112
Predicted protein (387 aa)
     
  0.869
Phatr15423
Predicted protein (367 aa)
     
  0.869
Phatr16490
Predicted protein (281 aa)
   
   
 
0.825
Phatr29658
Predicted protein (259 aa)
   
   
 
0.801
Phatr43018
Predicted protein (509 aa)
     
 
  0.763
GltD
Synthase of glutamate synthase (580 aa)
     
 
  0.763
CPS-II
Predicted protein (1542 aa)
         
  0.715
Phatr24195
CPS III, carbamoyl-phosphate synthase mitochindrial (1463 aa)
         
  0.715
Phatr51720
Fumarate reductase flavoprotein (668 aa)
   
  0.698
Phatr12902
Predicted protein (536 aa)
 
 
  0.674
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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