STRINGSTRING
Phatr29702 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr29702" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr29702Predicted protein (878 aa)    
Predicted Functional Partners:
Phatr3787
Predicted protein (333 aa)
   
 
  0.975
Phatr5145
Predicted protein (226 aa)
 
 
  0.973
Phatr38509
Predicted protein (301 aa)
       
  0.954
Phatr48625
Predicted protein (666 aa)
   
 
  0.917
Phatr15968
Predicted protein (1387 aa)
         
  0.749
Phatr27735
Predicted protein (538 aa)
         
  0.744
Phatr22113
Bifunctional aspartokinase (870 aa)
         
  0.579
Phatr50281
Predicted protein (417 aa)
         
  0.572
Phatr23168
Predicted protein (252 aa)
         
  0.572
Phatr40880
Agmatinase (416 aa)
         
  0.560
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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