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Phatr29824 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatr29824" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr29824Predicted protein (1177 aa)    
Predicted Functional Partners:
Phatr11088
Predicted protein (1086 aa)
   
  0.992
Phatr27385
Predicted protein (697 aa)
   
  0.984
Phatr16963
Glutaminyl-trna synthetase (568 aa)
   
  0.984
GluRS_1
Glutamate-trna ligase (523 aa)
   
  0.970
PheRS
Phenylalanyl-trna synthetase class IIc family protein (405 aa)
   
 
  0.944
Phatr43097
Predicted protein (671 aa)
   
  0.940
Phatr23547
Predicted protein (479 aa)
   
  0.940
Phatr27709
Predicted protein (640 aa)
   
 
  0.922
Phatr42051
Predicted protein (579 aa)
   
  0.919
Phatr41016
Predicted protein (460 aa)
   
  0.919
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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